Variant report

Variant	rs16858303
Chromosome Location	chr3:146086392-146086393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1512070	1.00[AFR][1000 genomes]
rs1512071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7617461	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146085400-146086800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:146085800-146086400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:146085800-146086600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:146085800-146086600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:146086000-146086400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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