Variant report

Variant	rs16858340
Chromosome Location	chr3:111335358-111335359
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111295970..111297364-chr3:111335015..111336070,12	MCF-7	breast:
2	chr3:111296298..111297275-chr3:111335061..111336045,5	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12695245	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1513331	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9817582	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9868266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9876834	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111324400-111336800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:111331000-111336800	Weak transcription	NHEK	skin
3	chr3:111332200-111336600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:111333400-111337000	Genic enhancers	Primary T cells from cord blood	blood
5	chr3:111333400-111337200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr3:111333600-111337000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:111333600-111337200	ZNF genes & repeats	Dnd41	blood
8	chr3:111333800-111336800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:111333800-111337000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:111333800-111337400	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr3:111334000-111336000	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:111334000-111337200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr3:111334200-111335600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:111334200-111335600	Enhancers	Thymus	Thymus
15	chr3:111334200-111336200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:111334200-111337200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:111334400-111335400	Enhancers	Fetal Thymus	thymus
18	chr3:111334400-111337000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr3:111334600-111335800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:111334600-111335800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:111334600-111336000	Enhancers	Primary B cells from cord blood	blood
22	chr3:111334600-111336000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:111334600-111336600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:111334800-111335400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:111335000-111335600	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:111335000-111335800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:111335200-111335600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:111335200-111335600	Enhancers	HMEC	breast
29	chr3:111335200-111336000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:111335200-111336400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:111335200-111336400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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