Variant report

Variant	rs9876834
Chromosome Location	chr3:111345032-111345033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12695245	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1513331	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16858340	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817582	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9868266	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870533	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111337000-111346000	Weak transcription	Thymus	Thymus
2	chr3:111337200-111346000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:111338600-111347800	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr3:111341200-111346800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:111341400-111347800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:111341800-111347600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:111342000-111348000	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:111342400-111346800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr3:111342600-111345800	Strong transcription	Primary T cells from cord blood	blood
10	chr3:111342600-111347600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:111342800-111346800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:111343200-111347800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:111343600-111346000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:111343800-111346000	Strong transcription	Dnd41	blood
15	chr3:111344000-111345800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:111344200-111345200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:111344200-111346000	Weak transcription	Fetal Thymus	thymus
18	chr3:111344400-111345800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:111344400-111346000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:111344800-111345600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr3:111344800-111346800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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