Variant report

Variant	rs16858692
Chromosome Location	chr3:146373438-146373439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12486975	1.00[ASN][1000 genomes]
rs55761292	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56662827	1.00[ASN][1000 genomes]
rs61435584	1.00[ASN][1000 genomes]
rs73000426	1.00[ASN][1000 genomes]
rs73000439	1.00[ASN][1000 genomes]
rs73000440	1.00[ASN][1000 genomes]
rs73000444	1.00[ASN][1000 genomes]
rs73000447	1.00[ASN][1000 genomes]
rs73157001	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159104	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159118	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159142	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159160	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159170	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv4047	chr3:146368154-146401858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146372800-146373600	Enhancers	Liver	Liver
2	chr3:146372800-146374200	Enhancers	Dnd41	blood
3	chr3:146372800-146374400	Enhancers	HepG2	liver
4	chr3:146373000-146373600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:146373000-146373800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:146373200-146373600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:146373400-146375400	Weak transcription	Ovary	ovary
8	chr3:146373400-146376200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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