Variant report

Variant	rs16859018
Chromosome Location	chr3:111709704-111709705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111708236..111710235-chr3:111721906..111724491,2	K562	blood:
2	chr3:111700935..111702823-chr3:111707245..111710169,2	K562	blood:
3	chr3:111697585..111700295-chr3:111709326..111711552,2	K562	blood:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12635709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1709223	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2120094	0.81[JPT][hapmap]
rs2289597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs703271	0.81[CHB][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs774749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs774852	0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111698400-111710200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:111698600-111717400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:111698600-111717400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:111698600-111717400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:111698800-111717400	Weak transcription	Colonic Mucosa	Colon
6	chr3:111698800-111717400	Weak transcription	Placenta	Placenta
7	chr3:111698800-111717600	Weak transcription	HSMMtube	muscle
8	chr3:111699000-111717400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:111699200-111717400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:111699600-111712400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:111700000-111710200	Weak transcription	Hela-S3	cervix
12	chr3:111700000-111715600	Weak transcription	Spleen	Spleen
13	chr3:111700200-111710200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:111700200-111717400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:111700200-111717400	Weak transcription	Esophagus	oesophagus
16	chr3:111700200-111717400	Weak transcription	Pancreas	Pancrea
17	chr3:111700200-111717600	Weak transcription	Ovary	ovary
18	chr3:111700800-111710200	Weak transcription	Brain Angular Gyrus	brain
19	chr3:111700800-111711600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:111700800-111716200	Weak transcription	Small Intestine	intestine
21	chr3:111700800-111717400	Weak transcription	Fetal Heart	heart
22	chr3:111701000-111712000	Weak transcription	Fetal Brain Male	brain
23	chr3:111701000-111717400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:111701000-111717400	Weak transcription	NHLF	lung
25	chr3:111701200-111710200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:111701200-111717400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:111702200-111713000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:111703000-111712600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:111703600-111711200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:111703800-111711800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:111703800-111716400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:111705200-111712200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:111705200-111713000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr3:111705800-111712200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:111705800-111712800	Strong transcription	Osteobl	bone
36	chr3:111705800-111713000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:111706000-111711800	Weak transcription	Fetal Intestine Small	intestine
38	chr3:111706000-111717400	Weak transcription	Fetal Stomach	stomach
39	chr3:111706200-111717400	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:111706400-111710000	Weak transcription	Fetal Kidney	kidney
41	chr3:111706400-111711800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:111706400-111716400	Weak transcription	Brain Germinal Matrix	brain
43	chr3:111706400-111717400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr3:111706600-111710200	Weak transcription	Brain Anterior Caudate	brain
45	chr3:111706600-111717400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:111706600-111717400	Weak transcription	Brain Substantia Nigra	brain
47	chr3:111706800-111710200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr3:111706800-111710200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr3:111706800-111711600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:111706800-111712000	Weak transcription	Lung	lung

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