Variant report

Variant	rs1709223
Chromosome Location	chr3:111705368-111705369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111698497..111700927-chr3:111703000..111705838,3	K562	blood:
2	chr3:111696580..111701033-chr3:111701725..111706722,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12635709	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859018	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2289597	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774749	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs774751	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774852	0.81[AMR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111698400-111710200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:111698600-111717400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:111698600-111717400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:111698600-111717400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:111698800-111705800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:111698800-111705800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:111698800-111706200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:111698800-111717400	Weak transcription	Colonic Mucosa	Colon
9	chr3:111698800-111717400	Weak transcription	Placenta	Placenta
10	chr3:111698800-111717600	Weak transcription	HSMMtube	muscle
11	chr3:111699000-111717400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:111699200-111705800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:111699200-111705800	Weak transcription	HMEC	breast
14	chr3:111699200-111717400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:111699600-111712400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:111699800-111705600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:111699800-111705800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:111700000-111705400	Weak transcription	Lung	lung
19	chr3:111700000-111705600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:111700000-111705800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:111700000-111705800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:111700000-111705800	Weak transcription	NH-A	brain
23	chr3:111700000-111706000	Weak transcription	NHDF-Ad	bronchial
24	chr3:111700000-111707600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:111700000-111707800	Weak transcription	K562	blood
26	chr3:111700000-111710200	Weak transcription	Hela-S3	cervix
27	chr3:111700000-111715600	Weak transcription	Spleen	Spleen
28	chr3:111700200-111705400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:111700200-111705400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:111700200-111705800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:111700200-111705800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:111700200-111705800	Weak transcription	Gastric	stomach
33	chr3:111700200-111705800	Weak transcription	Left Ventricle	heart
34	chr3:111700200-111705800	Weak transcription	Psoas Muscle	Psoas
35	chr3:111700200-111706000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:111700200-111707400	Weak transcription	Right Ventricle	heart
37	chr3:111700200-111710200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:111700200-111717400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:111700200-111717400	Weak transcription	Esophagus	oesophagus
40	chr3:111700200-111717400	Weak transcription	Pancreas	Pancrea
41	chr3:111700200-111717600	Weak transcription	Ovary	ovary
42	chr3:111700400-111705800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:111700400-111705800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr3:111700800-111705800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:111700800-111705800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:111700800-111705800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:111700800-111705800	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:111700800-111705800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr3:111700800-111705800	Weak transcription	Thymus	Thymus
50	chr3:111700800-111705800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links