Variant report

Variant	rs16860053
Chromosome Location	chr3:112512888-112512889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112358733..112361438-chr3:112512549..112515487,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11922317	1.00[MEX][hapmap]
rs2129942	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7630531	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112509200-112518000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:112511600-112515000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:112511600-112515200	Enhancers	Primary T cells from cord blood	blood
4	chr3:112511800-112513200	Enhancers	A549	lung
5	chr3:112511800-112514000	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:112511800-112514800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:112511800-112515000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:112511800-112515000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:112511800-112515000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:112511800-112515800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:112512000-112513200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:112512000-112513200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:112512000-112513600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:112512000-112513800	Enhancers	Primary B cells from cord blood	blood
15	chr3:112512000-112513800	Enhancers	Osteobl	bone
16	chr3:112512000-112514000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr3:112512000-112514200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:112512000-112514200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:112512000-112514400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:112512200-112513000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:112512200-112513000	Enhancers	NHDF-Ad	bronchial
22	chr3:112512200-112513400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:112512200-112513600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:112512200-112513800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:112512200-112514400	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:112512200-112514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:112512200-112514600	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr3:112512200-112514800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:112512200-112515200	Enhancers	Stomach Mucosa	stomach
30	chr3:112512400-112513000	Enhancers	NHEK	skin
31	chr3:112512400-112513400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr3:112512400-112513800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:112512400-112514400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr3:112512600-112513000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:112512600-112513000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr3:112512600-112513000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr3:112512600-112513400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:112512600-112513800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:112512600-112513800	Enhancers	Placenta	Placenta
40	chr3:112512600-112514000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr3:112512600-112514000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:112512600-112514000	Enhancers	Spleen	Spleen
43	chr3:112512800-112513000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:112512800-112513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:112512800-112513400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:112512800-112514000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr3:112512800-112514000	Enhancers	Ovary	ovary
48	chr3:112512800-112514200	Enhancers	K562	blood
49	chr3:112512800-112518000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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