Variant report

Variant	rs2129942
Chromosome Location	chr3:112512175-112512176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112510669..112512839-chr3:112519950..112522382,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242770	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16860053	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112495200-112512600	Weak transcription	Spleen	Spleen
2	chr3:112505200-112512800	Weak transcription	Ovary	ovary
3	chr3:112509000-112512800	Weak transcription	K562	blood
4	chr3:112509200-112512200	Weak transcription	Stomach Mucosa	stomach
5	chr3:112509200-112518000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:112509600-112512400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:112510800-112512400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:112511200-112512600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:112511600-112515000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:112511600-112515200	Enhancers	Primary T cells from cord blood	blood
11	chr3:112511800-112512600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:112511800-112513200	Enhancers	A549	lung
13	chr3:112511800-112514000	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:112511800-112514800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:112511800-112515000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:112511800-112515000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:112511800-112515000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:112511800-112515800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:112512000-112512800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:112512000-112512800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:112512000-112512800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:112512000-112513200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:112512000-112513200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:112512000-112513600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:112512000-112513800	Enhancers	Primary B cells from cord blood	blood
26	chr3:112512000-112513800	Enhancers	Osteobl	bone
27	chr3:112512000-112514000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr3:112512000-112514200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr3:112512000-112514200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:112512000-112514400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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