Variant report

Variant	rs16860200
Chromosome Location	chr4:47415852-47415853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13115740	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13129226	1.00[ASN][1000 genomes]
rs17653595	0.84[YRI][hapmap]
rs34022241	1.00[ASN][1000 genomes]
rs35197130	1.00[ASN][1000 genomes]
rs35796318	1.00[ASN][1000 genomes]
rs4070	1.00[ASN][1000 genomes]
rs4435723	1.00[CEU][hapmap]
rs4532215	1.00[CEU][hapmap]
rs4585276	1.00[CEU][hapmap]
rs4694849	1.00[ASN][1000 genomes]
rs59268722	1.00[ASN][1000 genomes]
rs71611998	1.00[ASN][1000 genomes]
rs73237075	1.00[ASN][1000 genomes]
rs73237093	1.00[ASN][1000 genomes]
rs73813526	0.94[EUR][1000 genomes]
rs7690580	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9998984	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain
2	chr4:47415000-47416000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:47415000-47416000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:47415400-47416800	Enhancers	Fetal Kidney	kidney
5	chr4:47415600-47416400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:47415800-47416400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:47415800-47416800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:47415800-47417000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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