Variant report
Variant | rs7690580 |
---|---|
Chromosome Location | chr4:47414409-47414410 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10938486 | 1.00[ASN][1000 genomes] |
rs11729677 | 1.00[ASN][1000 genomes] |
rs13115740 | 1.00[CEU][hapmap];0.96[TSI][hapmap] |
rs13140559 | 1.00[CEU][hapmap] |
rs16860200 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
rs17600665 | 0.81[CEU][hapmap] |
rs17653595 | 0.81[CEU][hapmap] |
rs28589873 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34022241 | 0.93[EUR][1000 genomes] |
rs34096542 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35293354 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35796318 | 0.93[EUR][1000 genomes] |
rs4435723 | 1.00[CEU][hapmap];0.96[TSI][hapmap] |
rs4502656 | 0.90[GIH][hapmap] |
rs4510445 | 1.00[ASN][1000 genomes] |
rs4532215 | 1.00[CEU][hapmap];0.96[TSI][hapmap];1.00[ASN][1000 genomes] |
rs4585276 | 1.00[CEU][hapmap];0.96[TSI][hapmap] |
rs4695234 | 1.00[CEU][hapmap] |
rs73813526 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9993271 | 1.00[ASN][1000 genomes] |
rs9998984 | 1.00[CEU][hapmap];0.96[TSI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv998919 | chr4:47207023-47476876 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv879005 | chr4:47408838-47548254 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:47404000-47439000 | Weak transcription | Brain Anterior Caudate | brain |