Variant report

Variant	rs34096542
Chromosome Location	chr4:47425826-47425827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47425451..47428331-chr4:47428663..47430199,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10938486	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11729677	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645143	0.83[AMR][1000 genomes]
rs13103660	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13115740	0.82[EUR][1000 genomes]
rs13129226	0.83[EUR][1000 genomes]
rs13140559	0.83[AMR][1000 genomes]
rs28409227	0.81[AMR][1000 genomes]
rs28436205	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28572263	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28588386	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28589873	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34022241	1.00[EUR][1000 genomes]
rs35143328	0.83[AMR][1000 genomes]
rs35197130	0.83[EUR][1000 genomes]
rs35293354	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35796318	1.00[EUR][1000 genomes]
rs4070	0.83[EUR][1000 genomes]
rs4235149	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4235150	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4349580	0.83[AMR][1000 genomes]
rs4435723	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4510445	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4532215	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585276	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4694849	0.82[EUR][1000 genomes]
rs4695233	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4695234	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59268722	0.82[EUR][1000 genomes]
rs6447553	0.81[EUR][1000 genomes]
rs6447554	0.81[EUR][1000 genomes]
rs71611998	0.82[EUR][1000 genomes]
rs73813526	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690580	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993271	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998984	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain
2	chr4:47425400-47433000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:47425800-47426800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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