Variant report

Variant	rs28409227
Chromosome Location	chr4:47475859-47475860
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10938485	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10938486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11729677	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12645143	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103660	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115740	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13129226	0.91[EUR][1000 genomes]
rs13140559	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28436205	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572263	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588386	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34096542	0.81[AMR][1000 genomes]
rs35143328	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35197130	0.91[EUR][1000 genomes]
rs35293354	0.91[AMR][1000 genomes]
rs4070	0.91[EUR][1000 genomes]
rs4235149	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235150	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349580	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4435723	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510445	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4532215	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4585276	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4694849	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4695233	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695234	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59268722	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6447553	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447554	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843791	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71611998	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9993271	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9998984	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47471200-47487000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:47474200-47476800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:47474800-47476000	Weak transcription	Placenta	Placenta
4	chr4:47475600-47476400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr4:47475800-47480800	Weak transcription	Placenta Amnion	Placenta Amnion

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