Variant report

Variant	rs16860822
Chromosome Location	chr2:173566775-173566776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16860635	1.00[MEX][hapmap]
rs16860828	1.00[AMR][1000 genomes]
rs41340852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6709758	0.92[YRI][hapmap]
rs6733929	1.00[AMR][1000 genomes]
rs6755107	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173564000-173571600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:173564200-173568000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:173564200-173575600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:173565400-173567000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:173565400-173568000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:173565600-173566800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:173565600-173567000	Enhancers	HMEC	breast
8	chr2:173565600-173567000	Enhancers	NH-A	brain
9	chr2:173565600-173567600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:173565600-173568000	Enhancers	NHDF-Ad	bronchial
11	chr2:173565800-173566800	Enhancers	Osteobl	bone
12	chr2:173565800-173567000	Enhancers	NHEK	skin
13	chr2:173565800-173567000	Enhancers	NHLF	lung
14	chr2:173565800-173567800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:173565800-173577200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:173566000-173569000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:173566000-173575400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:173566200-173567400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:173566200-173567800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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