Variant report

Variant	rs41340852
Chromosome Location	chr2:173562849-173562850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173558154..173560301-chr2:173561566..173564675,4	MCF-7	breast:
2	chr2:173561632..173563652-chr2:173565236..173567735,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16860635	1.00[MEX][hapmap]
rs16860822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860828	1.00[AMR][1000 genomes]
rs6709758	0.92[YRI][hapmap]
rs6733929	1.00[AMR][1000 genomes]
rs6755107	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173556800-173564600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:173558800-173563000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:173559000-173563000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:173560600-173565400	Weak transcription	Esophagus	oesophagus
5	chr2:173561800-173563600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:173561800-173563600	Enhancers	NHDF-Ad	bronchial
7	chr2:173561800-173563800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:173561800-173564400	Enhancers	NHEK	skin
9	chr2:173561800-173564400	Enhancers	NHLF	lung
10	chr2:173562000-173563400	Enhancers	HSMM	muscle
11	chr2:173562000-173563600	Enhancers	Osteobl	bone
12	chr2:173562000-173564000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:173562000-173564200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:173562000-173564200	Enhancers	HMEC	breast
15	chr2:173562000-173564400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:173562200-173563800	Enhancers	NH-A	brain
17	chr2:173562400-173563200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr2:173562400-173563400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:173562400-173563600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:173562400-173563600	Enhancers	Hela-S3	cervix
21	chr2:173562400-173563600	Enhancers	HUVEC	blood vessel
22	chr2:173562600-173563200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:173562600-173563400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:173562600-173563400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr2:173562600-173563400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr2:173562600-173563800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:173562800-173563200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr2:173562800-173563400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:173562800-173563600	Flanking Active TSS	A549	lung

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