Variant report

Variant	rs16861062
Chromosome Location	chr2:173812254-173812255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10754979	1.00[ASN][1000 genomes]
rs12465032	1.00[ASN][1000 genomes]
rs12619862	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12986507	1.00[ASN][1000 genomes]
rs13023047	0.82[ASN][1000 genomes]
rs16861058	0.92[AFR][1000 genomes]
rs17707776	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974922	1.00[ASN][1000 genomes]
rs4972519	1.00[ASN][1000 genomes]
rs62174630	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62174645	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72894145	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894151	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745288	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:173807800-173816200	Weak transcription	Lung	lung
3	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
4	chr2:173809600-173816400	Weak transcription	Thymus	Thymus
5	chr2:173811000-173813000	Enhancers	Hela-S3	cervix
6	chr2:173811400-173813600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:173812000-173812400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:173812000-173812400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:173812000-173813000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:173812000-173813000	Enhancers	HUVEC	blood vessel
11	chr2:173812000-173813000	Enhancers	NHLF	lung
12	chr2:173812000-173813000	Enhancers	Osteobl	bone
13	chr2:173812200-173812400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:173812200-173812400	Enhancers	Liver	Liver
15	chr2:173812200-173812400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr2:173812200-173812400	Enhancers	NHEK	skin
17	chr2:173812200-173812600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr2:173812200-173812800	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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