Variant report

Variant	rs17707776
Chromosome Location	chr2:173809301-173809302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173807271..173811416-chr2:173814646..173816998,4	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1011345	1.00[AFR][1000 genomes]
rs10497387	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10754979	1.00[ASN][1000 genomes]
rs12465032	1.00[ASN][1000 genomes]
rs12467354	0.86[AMR][1000 genomes]
rs12616206	1.00[AFR][1000 genomes]
rs12619862	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12624093	1.00[AFR][1000 genomes]
rs12986507	1.00[ASN][1000 genomes]
rs13023047	0.82[ASN][1000 genomes]
rs1446978	0.86[AMR][1000 genomes]
rs1530591	0.82[AMR][1000 genomes]
rs16861062	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861089	0.86[AMR][1000 genomes]
rs16861125	1.00[AFR][1000 genomes]
rs16861148	1.00[AFR][1000 genomes]
rs16861173	1.00[AFR][1000 genomes]
rs17708115	0.86[AMR][1000 genomes]
rs17759303	0.86[AMR][1000 genomes]
rs1974922	1.00[ASN][1000 genomes]
rs2121483	1.00[AFR][1000 genomes]
rs2166588	1.00[AFR][1000 genomes]
rs2242079	1.00[AFR][1000 genomes]
rs2305461	1.00[AFR][1000 genomes]
rs3769225	1.00[AFR][1000 genomes]
rs3769226	1.00[AFR][1000 genomes]
rs3769227	1.00[AFR][1000 genomes]
rs3769229	1.00[AFR][1000 genomes]
rs3769245	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs3769246	1.00[AFR][1000 genomes]
rs3769248	1.00[AFR][1000 genomes]
rs3820840	1.00[AFR][1000 genomes]
rs3820841	1.00[AFR][1000 genomes]
rs4972519	1.00[ASN][1000 genomes]
rs62174630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62174632	1.00[AFR][1000 genomes]
rs62174644	1.00[AFR][1000 genomes]
rs62174645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62175769	1.00[AFR][1000 genomes]
rs72894145	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896056	0.86[AMR][1000 genomes]
rs72896070	1.00[AFR][1000 genomes]
rs72908291	0.82[AMR][1000 genomes]
rs72908293	0.86[AMR][1000 genomes]
rs72909440	1.00[AFR][1000 genomes]
rs72909444	1.00[AFR][1000 genomes]
rs72909446	1.00[AFR][1000 genomes]
rs745288	0.86[ASN][1000 genomes]
rs768030	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800400-173812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:173807000-173810000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:173807000-173810400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:173807200-173809600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr2:173807400-173809600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr2:173807600-173809400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr2:173807600-173809400	Bivalent Enhancer	Dnd41	blood
9	chr2:173807600-173809600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr2:173807600-173809800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr2:173807600-173810200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr2:173807800-173816200	Weak transcription	Lung	lung
13	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
14	chr2:173808200-173810200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:173808400-173809600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:173808400-173810800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:173808400-173811000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr2:173808400-173811600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:173808600-173809600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:173808600-173809600	Enhancers	Thymus	Thymus
21	chr2:173808600-173809800	Enhancers	Fetal Thymus	thymus
22	chr2:173808600-173810600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr2:173808600-173811400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:173808800-173809400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:173808800-173809400	Enhancers	Fetal Brain Female	brain
26	chr2:173808800-173809600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr2:173808800-173809800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:173809000-173809600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr2:173809000-173809600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:173809000-173810600	Enhancers	Hela-S3	cervix
31	chr2:173809200-173809600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:173809200-173810200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr2:173809200-173810400	Enhancers	Primary T cells from cord blood	blood
34	chr2:173809200-173811800	Enhancers	Liver	Liver
35	chr2:173809200-173812200	Weak transcription	NHEK	skin

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