Variant report

Variant	rs16861125
Chromosome Location	chr2:173848715-173848716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:173848627..173852133-chr2:173863177..173865329,4	MCF-7	breast:
2	chr2:173844924..173850688-chr2:173851282..173855756,6	K562	blood:
3	chr2:173848162..173850898-chr2:173858454..173860280,2	MCF-7	breast:
4	chr2:173843570..173846264-chr2:173848110..173849816,3	K562	blood:
5	chr2:173846731..173848275-chr2:173848312..173850706,2	K562	blood:
6	chr2:173848593..173850248-chr2:173906462..173908471,2	MCF-7	breast:
7	chr2:173847799..173849946-chr2:173883795..173886644,2	MCF-7	breast:
8	chr2:173838607..173842976-chr2:173848438..173851310,4	MCF-7	breast:

No data

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1011345	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10497387	1.00[AFR][1000 genomes]
rs11687902	0.97[ASN][1000 genomes]
rs11687990	0.97[ASN][1000 genomes]
rs11885983	0.93[ASN][1000 genomes]
rs12616206	1.00[AFR][1000 genomes]
rs12616563	0.93[ASN][1000 genomes]
rs12624093	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12693015	0.89[ASN][1000 genomes]
rs12693016	0.98[ASN][1000 genomes]
rs12996130	0.88[ASN][1000 genomes]
rs13000260	0.98[ASN][1000 genomes]
rs13413796	0.98[ASN][1000 genomes]
rs16861148	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16861173	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17302307	0.97[ASN][1000 genomes]
rs17374295	0.98[ASN][1000 genomes]
rs17707776	1.00[AFR][1000 genomes]
rs1823151	0.92[ASN][1000 genomes]
rs1979186	0.93[ASN][1000 genomes]
rs2121483	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2166588	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2242079	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2258918	1.00[ASN][1000 genomes]
rs2305461	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2592944	1.00[ASN][1000 genomes]
rs2602217	1.00[ASN][1000 genomes]
rs2676521	1.00[ASN][1000 genomes]
rs3754753	0.97[ASN][1000 genomes]
rs3769225	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3769226	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3769227	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3769228	0.93[ASN][1000 genomes]
rs3769229	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3769231	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3769236	0.97[ASN][1000 genomes]
rs3769245	1.00[AFR][1000 genomes]
rs3769246	1.00[AFR][1000 genomes]
rs3769248	1.00[AFR][1000 genomes]
rs3820840	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3820841	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3820843	0.97[ASN][1000 genomes]
rs3820844	0.97[ASN][1000 genomes]
rs4972523	0.97[ASN][1000 genomes]
rs62174630	1.00[AFR][1000 genomes]
rs62174632	1.00[AFR][1000 genomes]
rs62174644	1.00[AFR][1000 genomes]
rs62174645	1.00[AFR][1000 genomes]
rs62175769	1.00[AFR][1000 genomes]
rs66487735	0.97[ASN][1000 genomes]
rs718902	0.87[ASN][1000 genomes]
rs72896070	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72909440	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72909444	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72909446	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7603772	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173832200-173850000	Weak transcription	Brain Anterior Caudate	brain
2	chr2:173832600-173850200	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
5	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
6	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
7	chr2:173835800-173886800	Weak transcription	Lung	lung
8	chr2:173842400-173850800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:173842600-173850000	Weak transcription	Fetal Heart	heart
10	chr2:173842800-173855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:173843200-173849000	Weak transcription	Fetal Stomach	stomach
12	chr2:173843200-173850000	Weak transcription	Left Ventricle	heart
13	chr2:173843200-173850000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:173843200-173861400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:173843400-173849400	Weak transcription	Fetal Thymus	thymus
16	chr2:173843400-173858200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:173843600-173850400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr2:173844200-173850000	Weak transcription	Liver	Liver
19	chr2:173844400-173849400	Weak transcription	A549	lung
20	chr2:173845400-173853200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:173847800-173851800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:173848000-173851000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:173848600-173849800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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