The 2.0 version of rSNPBase

Variant report

Variant rs3820843
Chromosome Location chr2:173864723-173864724
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173835800-173886800 Weak transcription Lung lung
2 chr2:173852400-173868000 Weak transcription Gastric stomach
3 chr2:173856000-173885200 Weak transcription Brain Anterior Caudate brain
4 chr2:173856200-173882400 Weak transcription Left Ventricle heart
5 chr2:173856200-173892600 Weak transcription Brain Angular Gyrus brain
6 chr2:173858400-173869000 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr2:173860600-173868000 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr2:173860800-173877800 Weak transcription Adipose Nuclei Adipose
9 chr2:173861000-173867400 Weak transcription Stomach Mucosa stomach
10 chr2:173861000-173888000 Weak transcription Fetal Stomach stomach
11 chr2:173861200-173866800 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr2:173861200-173867400 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr2:173861400-173867800 Strong transcription Liver Liver
14 chr2:173861600-173866800 Weak transcription Fetal Kidney kidney
15 chr2:173861600-173867600 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr2:173861800-173864800 Enhancers A549 lung
17 chr2:173861800-173868000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr2:173862000-173865200 Weak transcription Ovary ovary
19 chr2:173862200-173867000 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr2:173862200-173881800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr2:173862200-173883600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr2:173862400-173870600 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr2:173862600-173864800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr2:173862800-173865200 Enhancers Fetal Heart heart
25 chr2:173862800-173868600 Enhancers Skeletal Muscle Male skeletal muscle
26 chr2:173862800-173874000 Weak transcription Small Intestine intestine
27 chr2:173863400-173864800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr2:173863400-173871600 Weak transcription Right Atrium heart
29 chr2:173863800-173866800 Enhancers Fetal Brain Male brain
30 chr2:173863800-173867400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr2:173864000-173866800 Weak transcription Hela-S3 cervix
32 chr2:173864200-173864800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr2:173864200-173864800 Enhancers Fetal Lung lung
34 chr2:173864400-173864800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr2:173864600-173864800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr2:173864600-173864800 Enhancers Psoas Muscle Psoas
37 chr2:173864600-173864800 Active TSS Skeletal Muscle Female skeletal muscle
38 chr2:173864600-173870400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015