Variant report

Variant	rs3769225
Chromosome Location	chr2:173880912-173880913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173874368..173876154-chr2:173879037..173881952,2	MCF-7	breast:
2	chr2:173873426..173877615-chr2:173879611..173885929,8	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1011345	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10497387	1.00[AFR][1000 genomes]
rs11687902	0.97[ASN][1000 genomes]
rs11687990	0.97[ASN][1000 genomes]
rs11885983	1.00[ASN][1000 genomes]
rs12616206	1.00[AFR][1000 genomes]
rs12616563	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12624093	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693015	0.86[ASN][1000 genomes]
rs12693016	0.95[ASN][1000 genomes]
rs12996130	0.85[ASN][1000 genomes]
rs13000260	0.95[ASN][1000 genomes]
rs13413796	0.95[ASN][1000 genomes]
rs16861125	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16861148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17302307	0.97[ASN][1000 genomes]
rs17374295	0.95[ASN][1000 genomes]
rs17707776	1.00[AFR][1000 genomes]
rs1823151	0.88[ASN][1000 genomes]
rs1979186	1.00[ASN][1000 genomes]
rs2121483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242079	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2258918	0.93[ASN][1000 genomes]
rs2305461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2592944	0.93[ASN][1000 genomes]
rs2602217	0.93[ASN][1000 genomes]
rs2676521	0.93[ASN][1000 genomes]
rs3754753	0.97[ASN][1000 genomes]
rs3769226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3769228	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769231	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769236	0.97[ASN][1000 genomes]
rs3769245	1.00[AFR][1000 genomes]
rs3769246	1.00[AFR][1000 genomes]
rs3769248	1.00[AFR][1000 genomes]
rs3820840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820843	0.97[ASN][1000 genomes]
rs3820844	0.97[ASN][1000 genomes]
rs4972523	0.97[ASN][1000 genomes]
rs62174630	1.00[AFR][1000 genomes]
rs62174632	1.00[AFR][1000 genomes]
rs62174644	1.00[AFR][1000 genomes]
rs62174645	1.00[AFR][1000 genomes]
rs62175769	1.00[AFR][1000 genomes]
rs66487735	0.97[ASN][1000 genomes]
rs718902	0.84[ASN][1000 genomes]
rs72896070	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72909440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909444	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909446	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585997	0.85[ASN][1000 genomes]
rs7603772	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173835800-173886800	Weak transcription	Lung	lung
2	chr2:173856000-173885200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:173856200-173882400	Weak transcription	Left Ventricle	heart
4	chr2:173856200-173892600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173861000-173888000	Weak transcription	Fetal Stomach	stomach
6	chr2:173862200-173881800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:173862200-173883600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:173868000-173902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:173868600-173892200	Weak transcription	Fetal Intestine Large	intestine
10	chr2:173871000-173881200	Weak transcription	Ovary	ovary
11	chr2:173871000-173884400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:173871000-173886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:173871200-173881000	Weak transcription	Fetal Heart	heart
14	chr2:173877200-173901600	Weak transcription	Gastric	stomach
15	chr2:173877800-173887800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:173878200-173886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:173879000-173882400	Weak transcription	Right Atrium	heart
18	chr2:173879200-173882800	Weak transcription	Adipose Nuclei	Adipose
19	chr2:173879400-173881400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:173879400-173888600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:173880600-173882400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:173880800-173891600	Strong transcription	Liver	Liver

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