Variant report

Variant	rs7585997
Chromosome Location	chr2:173870047-173870048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173863206..173866013-chr2:173868383..173871052,3	K562	blood:
2	chr2:173863272..173865335-chr2:173868630..173870883,3	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11687902	0.82[ASN][1000 genomes]
rs11687990	0.82[ASN][1000 genomes]
rs11885983	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12616563	0.85[ASN][1000 genomes]
rs12624093	0.85[ASN][1000 genomes]
rs12693015	0.84[ASN][1000 genomes]
rs12693016	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12996130	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13000260	0.81[ASN][1000 genomes]
rs13413796	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1374488	0.96[AFR][1000 genomes]
rs16861148	0.85[ASN][1000 genomes]
rs16861173	0.85[ASN][1000 genomes]
rs17302307	0.82[ASN][1000 genomes]
rs17374295	0.81[ASN][1000 genomes]
rs1823151	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1979186	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2121483	0.85[ASN][1000 genomes]
rs2166588	0.85[ASN][1000 genomes]
rs2242079	0.84[ASN][1000 genomes]
rs2258918	0.89[EUR][1000 genomes]
rs2305461	0.85[ASN][1000 genomes]
rs2592944	0.90[EUR][1000 genomes]
rs2602217	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3754753	0.82[ASN][1000 genomes]
rs3769225	0.85[ASN][1000 genomes]
rs3769226	0.85[ASN][1000 genomes]
rs3769227	0.82[ASN][1000 genomes]
rs3769228	0.85[ASN][1000 genomes]
rs3769229	0.85[ASN][1000 genomes]
rs3769231	0.85[ASN][1000 genomes]
rs3769236	0.82[ASN][1000 genomes]
rs3820840	0.85[ASN][1000 genomes]
rs3820841	0.85[ASN][1000 genomes]
rs3820843	0.82[ASN][1000 genomes]
rs3820844	0.82[ASN][1000 genomes]
rs4972523	0.82[ASN][1000 genomes]
rs4972525	0.81[AFR][1000 genomes]
rs66487735	0.82[ASN][1000 genomes]
rs6760256	0.94[AFR][1000 genomes]
rs72909440	0.85[ASN][1000 genomes]
rs72909444	0.85[ASN][1000 genomes]
rs72909446	0.85[ASN][1000 genomes]
rs7603772	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173835800-173886800	Weak transcription	Lung	lung
2	chr2:173856000-173885200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:173856200-173882400	Weak transcription	Left Ventricle	heart
4	chr2:173856200-173892600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173860800-173877800	Weak transcription	Adipose Nuclei	Adipose
6	chr2:173861000-173888000	Weak transcription	Fetal Stomach	stomach
7	chr2:173862200-173881800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:173862200-173883600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:173862400-173870600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:173862800-173874000	Weak transcription	Small Intestine	intestine
11	chr2:173863400-173871600	Weak transcription	Right Atrium	heart
12	chr2:173864600-173870400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:173867000-173870600	Weak transcription	Fetal Heart	heart
14	chr2:173867800-173870600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:173867800-173880800	Weak transcription	Liver	Liver
16	chr2:173868000-173902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:173868200-173870600	Weak transcription	Psoas Muscle	Psoas
18	chr2:173868200-173875400	Weak transcription	Pancreas	Pancrea
19	chr2:173868200-173878600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:173868600-173870600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr2:173868600-173892200	Weak transcription	Fetal Intestine Large	intestine
22	chr2:173869000-173870600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:173869000-173870600	Weak transcription	Ovary	ovary
24	chr2:173869000-173870800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:173869000-173870800	Enhancers	A549	lung
26	chr2:173869000-173873000	Weak transcription	HepG2	liver
27	chr2:173870000-173870200	Enhancers	HSMMtube	muscle
28	chr2:173870000-173871200	Enhancers	Primary neutrophils fromperipheralblood	blood

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