Variant report

Variant	rs3769246
Chromosome Location	chr2:173836111-173836112
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173821930..173824208-chr2:173835620..173838568,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1011345	1.00[AFR][1000 genomes]
rs10497387	1.00[AFR][1000 genomes]
rs12616206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12619395	1.00[JPT][hapmap]
rs12624093	1.00[AFR][1000 genomes]
rs16861125	1.00[AFR][1000 genomes]
rs16861148	1.00[AFR][1000 genomes]
rs16861173	1.00[AFR][1000 genomes]
rs16861227	1.00[JPT][hapmap]
rs17707776	1.00[AFR][1000 genomes]
rs2121483	1.00[AFR][1000 genomes]
rs2166588	1.00[AFR][1000 genomes]
rs2242079	1.00[AFR][1000 genomes]
rs2305461	1.00[AFR][1000 genomes]
rs3769225	1.00[AFR][1000 genomes]
rs3769226	1.00[AFR][1000 genomes]
rs3769227	1.00[AFR][1000 genomes]
rs3769229	1.00[AFR][1000 genomes]
rs3769245	1.00[AFR][1000 genomes]
rs3769248	1.00[AFR][1000 genomes]
rs3820840	1.00[AFR][1000 genomes]
rs3820841	1.00[AFR][1000 genomes]
rs62174630	1.00[AFR][1000 genomes]
rs62174632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62174643	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62174644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62174645	1.00[AFR][1000 genomes]
rs62175769	1.00[AFR][1000 genomes]
rs72896070	1.00[AFR][1000 genomes]
rs72909440	1.00[AFR][1000 genomes]
rs72909444	1.00[AFR][1000 genomes]
rs72909446	1.00[AFR][1000 genomes]
rs7603458	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173829000-173842800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:173830400-173840400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:173831600-173838200	Enhancers	Fetal Thymus	thymus
4	chr2:173832200-173850000	Weak transcription	Brain Anterior Caudate	brain
5	chr2:173832600-173850200	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:173832800-173837600	Enhancers	Liver	Liver
7	chr2:173833800-173842200	Weak transcription	Fetal Heart	heart
8	chr2:173833800-173845000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
11	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
12	chr2:173834000-173841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:173834200-173836800	Enhancers	Dnd41	blood
14	chr2:173834200-173841400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:173834200-173842200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
17	chr2:173834800-173837200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:173835000-173836200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr2:173835200-173840800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr2:173835600-173836200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:173835600-173836200	Enhancers	Fetal Stomach	stomach
22	chr2:173835800-173836800	Enhancers	Primary T cells from cord blood	blood
23	chr2:173835800-173842800	Weak transcription	Left Ventricle	heart
24	chr2:173835800-173886800	Weak transcription	Lung	lung
25	chr2:173836000-173837800	Enhancers	Thymus	Thymus
26	chr2:173836000-173840800	Weak transcription	Fetal Lung	lung

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