Variant report

Variant	rs62174643
Chromosome Location	chr2:173809751-173809752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173807271..173811416-chr2:173814646..173816998,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12616206	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3769246	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62174632	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62174644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800400-173812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:173807000-173810000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:173807000-173810400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:173807600-173809800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr2:173807600-173810200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:173807800-173816200	Weak transcription	Lung	lung
8	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
9	chr2:173808200-173810200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:173808400-173810800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:173808400-173811000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:173808400-173811600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:173808600-173809800	Enhancers	Fetal Thymus	thymus
14	chr2:173808600-173810600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:173808600-173811400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:173808800-173809800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:173809000-173810600	Enhancers	Hela-S3	cervix
18	chr2:173809200-173810200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr2:173809200-173810400	Enhancers	Primary T cells from cord blood	blood
20	chr2:173809200-173811800	Enhancers	Liver	Liver
21	chr2:173809200-173812200	Weak transcription	NHEK	skin
22	chr2:173809400-173811400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr2:173809400-173811400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:173809600-173810400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:173809600-173812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:173809600-173812000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:173809600-173816400	Weak transcription	Thymus	Thymus

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