Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173807271..173811416-chr2:173814646..173816998,4	K562	blood:
2	chr2:173805861..173807368-chr2:173813126..173815516,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10497388	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs10497389	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs12467354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12619862	0.86[AMR][1000 genomes]
rs1446978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530591	1.00[MEX][hapmap];0.95[AMR][1000 genomes]
rs16861089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16861137	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17707776	0.86[AMR][1000 genomes]
rs17759303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553003	1.00[CHB][hapmap]
rs3769237	0.84[AMR][1000 genomes]
rs3769245	0.88[MEX][hapmap]
rs62174630	0.86[AMR][1000 genomes]
rs62174645	0.86[AMR][1000 genomes]
rs72894145	0.82[AMR][1000 genomes]
rs72896055	0.86[AMR][1000 genomes]
rs72896056	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72908291	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908293	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768030	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:173807800-173816200	Weak transcription	Lung	lung
3	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
4	chr2:173809600-173816400	Weak transcription	Thymus	Thymus
5	chr2:173812400-173817000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:173813000-173816000	Weak transcription	Hela-S3	cervix
7	chr2:173813000-173818200	Weak transcription	Osteobl	bone
8	chr2:173813000-173818400	Weak transcription	NHLF	lung
9	chr2:173813400-173815000	Enhancers	Liver	Liver
10	chr2:173813600-173817600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search: