Variant report
Variant | rs16861305 |
---|---|
Chromosome Location | chr4:48466781-48466782 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10029785 | 0.91[JPT][hapmap] |
rs1015699 | 0.91[ASN][1000 genomes] |
rs10805168 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs10938534 | 0.85[CEU][hapmap] |
rs11731383 | 0.89[ASN][1000 genomes] |
rs11737677 | 0.81[CEU][hapmap] |
rs11945562 | 0.85[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes] |
rs12645951 | 0.91[JPT][hapmap] |
rs13119041 | 0.85[CEU][hapmap] |
rs13150017 | 0.83[ASN][1000 genomes] |
rs1352434 | 0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs1472967 | 0.91[JPT][hapmap] |
rs1488647 | 0.88[ASN][1000 genomes] |
rs1586540 | 0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs17575720 | 0.82[CEU][hapmap] |
rs1876469 | 0.85[CEU][hapmap] |
rs1948167 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs2102397 | 0.85[CEU][hapmap] |
rs2291474 | 0.91[JPT][hapmap] |
rs2291475 | 0.91[JPT][hapmap] |
rs2353314 | 0.84[ASN][1000 genomes] |
rs2353855 | 0.89[ASN][1000 genomes] |
rs2354348 | 0.85[CEU][hapmap] |
rs28470767 | 0.85[CEU][hapmap] |
rs35758434 | 0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs392187 | 0.91[JPT][hapmap] |
rs404445 | 0.91[JPT][hapmap] |
rs411261 | 0.91[JPT][hapmap] |
rs421833 | 0.91[JPT][hapmap] |
rs4694895 | 0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs4695377 | 0.89[ASN][1000 genomes] |
rs4695381 | 0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs62309455 | 0.90[ASN][1000 genomes] |
rs62309458 | 0.88[ASN][1000 genomes] |
rs6816010 | 0.91[JPT][hapmap] |
rs6821277 | 0.91[JPT][hapmap] |
rs6829716 | 0.82[JPT][hapmap] |
rs6834339 | 0.88[ASN][1000 genomes] |
rs6836632 | 0.85[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs6838613 | 0.84[EUR][1000 genomes] |
rs6843340 | 0.85[CEU][hapmap] |
rs6848073 | 0.91[JPT][hapmap] |
rs7438704 | 0.90[JPT][hapmap] |
rs7438713 | 0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7654770 | 0.82[JPT][hapmap] |
rs7667288 | 0.81[CEU][hapmap] |
rs7678379 | 0.85[CEU][hapmap];0.82[JPT][hapmap] |
rs7679210 | 0.82[CEU][hapmap] |
rs7683398 | 0.82[CEU][hapmap] |
rs7697851 | 0.85[CEU][hapmap];0.82[JPT][hapmap] |
rs992423 | 0.85[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv470034 | chr4:48427773-48605628 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
2 | nsv594121 | chr4:48427773-48605628 | Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1005268 | chr4:48444307-48484389 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv537086 | chr4:48444307-48484389 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:48464400-48471600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |