Variant report
Variant | rs2353314 |
---|---|
Chromosome Location | chr4:48463047-48463048 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10029785 | 0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap] |
rs1015699 | 0.89[EUR][1000 genomes] |
rs10805168 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10938534 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap] |
rs10938537 | 0.80[CHB][hapmap] |
rs1117010 | 0.83[ASN][1000 genomes] |
rs11731383 | 0.86[EUR][1000 genomes] |
rs11737677 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap] |
rs11945562 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap] |
rs12503644 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12507206 | 0.84[ASN][1000 genomes] |
rs12511991 | 0.84[ASN][1000 genomes] |
rs12645501 | 0.81[JPT][hapmap] |
rs12645951 | 0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs12649527 | 0.82[ASN][1000 genomes] |
rs12649528 | 0.82[ASN][1000 genomes] |
rs13105385 | 0.83[ASN][1000 genomes] |
rs13115295 | 0.84[ASN][1000 genomes] |
rs13119041 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap] |
rs13148849 | 0.83[ASN][1000 genomes] |
rs1352433 | 0.82[ASN][1000 genomes] |
rs1352434 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1472967 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs1488647 | 0.86[EUR][1000 genomes] |
rs1507865 | 0.81[JPT][hapmap] |
rs1586540 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs16861305 | 0.84[ASN][1000 genomes] |
rs17575720 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs17656094 | 0.81[JPT][hapmap] |
rs1876469 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap] |
rs1948167 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2029348 | 0.88[ASN][1000 genomes] |
rs2102397 | 0.83[CHB][hapmap] |
rs2291474 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2291475 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs2353315 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2353855 | 0.87[EUR][1000 genomes] |
rs2354348 | 0.83[CHB][hapmap];0.82[CHD][hapmap] |
rs28409655 | 0.80[ASN][1000 genomes] |
rs28470767 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap] |
rs34975258 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35758434 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3828496 | 0.83[ASN][1000 genomes] |
rs392187 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
rs404348 | 0.83[ASN][1000 genomes] |
rs404445 | 0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap] |
rs411261 | 0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap] |
rs421833 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
rs450498 | 0.83[ASN][1000 genomes] |
rs4536901 | 0.81[JPT][hapmap] |
rs4694895 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4695377 | 0.85[EUR][1000 genomes] |
rs4695381 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4695391 | 0.81[JPT][hapmap] |
rs62309425 | 0.83[ASN][1000 genomes] |
rs62309455 | 0.84[EUR][1000 genomes] |
rs62309458 | 0.85[EUR][1000 genomes] |
rs6447634 | 0.83[ASN][1000 genomes] |
rs6447635 | 0.88[ASN][1000 genomes] |
rs6811148 | 0.81[JPT][hapmap] |
rs6816010 | 0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6821277 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
rs6829705 | 0.86[ASN][1000 genomes] |
rs6829716 | 0.86[JPT][hapmap] |
rs6834339 | 0.86[EUR][1000 genomes] |
rs6836010 | 0.88[ASN][1000 genomes] |
rs6836632 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap] |
rs6838613 | 0.83[ASN][1000 genomes] |
rs6843340 | 0.82[CHD][hapmap];0.81[JPT][hapmap] |
rs6844211 | 0.88[ASN][1000 genomes] |
rs6848073 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6848395 | 0.86[ASN][1000 genomes] |
rs7438704 | 0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap] |
rs7654770 | 0.86[JPT][hapmap] |
rs7667288 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap] |
rs7672892 | 0.83[ASN][1000 genomes] |
rs7674269 | 0.81[ASN][1000 genomes] |
rs7678164 | 0.89[ASN][1000 genomes] |
rs7678379 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
rs7679210 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs7683398 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs7693461 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs7697851 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
rs776584 | 0.81[JPT][hapmap] |
rs776591 | 0.81[JPT][hapmap] |
rs796555 | 0.81[JPT][hapmap] |
rs923372 | 0.83[ASN][1000 genomes] |
rs923373 | 0.83[ASN][1000 genomes] |
rs9291323 | 0.83[ASN][1000 genomes] |
rs937888 | 0.81[JPT][hapmap] |
rs937889 | 0.81[JPT][hapmap] |
rs952289 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs974014 | 0.83[ASN][1000 genomes] |
rs974015 | 0.83[ASN][1000 genomes] |
rs974016 | 0.81[ASN][1000 genomes] |
rs992423 | 0.83[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap] |
rs9996532 | 0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv470034 | chr4:48427773-48605628 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
2 | nsv594121 | chr4:48427773-48605628 | Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1005268 | chr4:48444307-48484389 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv537086 | chr4:48444307-48484389 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:48462600-48463400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |