Variant report

Variant	rs16861327
Chromosome Location	chr3:113499324-113499325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113493016..113495735-chr3:113498127..113501071,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16861331	0.84[AFR][1000 genomes]
rs891573	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv482804	chr3:113432431-113581672	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv829678	chr3:113446177-113633053	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv877351	chr3:113450495-113637424	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1013746	chr3:113460162-113646657	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv432478	chr3:113492402-113614489	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113467200-113504000	Weak transcription	Fetal Stomach	stomach
2	chr3:113467200-113514800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:113467200-113528600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:113468000-113499800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:113468000-113502800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:113469000-113519400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:113469600-113502400	Weak transcription	Hela-S3	cervix
8	chr3:113469800-113499800	Weak transcription	Fetal Intestine Small	intestine
9	chr3:113472600-113505800	Weak transcription	Right Ventricle	heart
10	chr3:113472800-113504400	Weak transcription	Lung	lung
11	chr3:113473600-113502400	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:113474200-113501600	Weak transcription	HUVEC	blood vessel
13	chr3:113477800-113501800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:113477800-113505000	Weak transcription	Brain Substantia Nigra	brain
15	chr3:113477800-113513200	Weak transcription	Fetal Brain Male	brain
16	chr3:113478000-113499400	Weak transcription	Primary B cells from cord blood	blood
17	chr3:113478000-113501800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:113478000-113502600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:113478200-113502400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:113479200-113502000	Weak transcription	GM12878-XiMat	blood
21	chr3:113480800-113516600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:113482800-113506000	Weak transcription	Thymus	Thymus
23	chr3:113483400-113505600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:113486800-113502000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:113487200-113513200	Weak transcription	K562	blood
26	chr3:113487800-113512400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:113487800-113527800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:113488000-113513400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:113488200-113499400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:113488200-113505000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:113488200-113508400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:113488800-113501200	Weak transcription	HSMMtube	muscle
33	chr3:113488800-113501600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:113488800-113502400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:113488800-113504600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:113488800-113506200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:113491000-113505600	Weak transcription	Brain Angular Gyrus	brain
38	chr3:113491000-113513400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:113491200-113501600	Weak transcription	NHLF	lung
40	chr3:113491200-113505000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:113491200-113505000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr3:113491200-113513400	Weak transcription	HepG2	liver
43	chr3:113491200-113524600	Weak transcription	Psoas Muscle	Psoas
44	chr3:113491200-113532600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:113492800-113499400	Weak transcription	NHDF-Ad	bronchial
46	chr3:113492800-113502200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:113492800-113505000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr3:113492800-113505800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:113493000-113501600	Weak transcription	Osteobl	bone
50	chr3:113493200-113501600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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