Variant report

Variant	rs16863237
Chromosome Location	chr1:170278553-170278554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170273398..170275086-chr1:170277805..170279619,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12073288	1.00[AMR][1000 genomes]
rs12075569	1.00[AMR][1000 genomes]
rs2184043	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170270400-170279200	Weak transcription	Aorta	Aorta
2	chr1:170271800-170278600	Weak transcription	Right Atrium	heart
3	chr1:170273200-170278600	Weak transcription	Ovary	ovary
4	chr1:170275400-170279000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:170275600-170279000	Enhancers	NHDF-Ad	bronchial
6	chr1:170276000-170279200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:170276200-170278600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:170276200-170280400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:170276800-170278600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:170277600-170279400	Enhancers	Fetal Heart	heart
11	chr1:170277800-170278600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:170278000-170278600	Enhancers	NH-A	brain
13	chr1:170278000-170279600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:170278200-170280400	Enhancers	Osteobl	bone
15	chr1:170278200-170280600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:170278400-170278600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:170278400-170278600	Enhancers	HSMM	muscle
18	chr1:170278400-170279000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:170278400-170279000	Flanking Active TSS	NHLF	lung
20	chr1:170278400-170279200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr1:170278400-170280000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:170278400-170280000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:170278400-170280200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:170278400-170280400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links