Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10494484	0.83[AFR][1000 genomes]
rs10919288	1.00[EUR][1000 genomes]
rs10919294	1.00[EUR][1000 genomes]
rs10919295	1.00[EUR][1000 genomes]
rs10919296	1.00[EUR][1000 genomes]
rs10919300	1.00[EUR][1000 genomes]
rs10919308	1.00[EUR][1000 genomes]
rs12061373	1.00[EUR][1000 genomes]
rs12061626	1.00[EUR][1000 genomes]
rs12075569	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076018	1.00[EUR][1000 genomes]
rs12077685	1.00[EUR][1000 genomes]
rs12087450	1.00[EUR][1000 genomes]
rs12088186	1.00[EUR][1000 genomes]
rs12090220	1.00[EUR][1000 genomes]
rs12091389	1.00[EUR][1000 genomes]
rs16862978	1.00[EUR][1000 genomes]
rs16863237	1.00[AMR][1000 genomes]
rs2184043	1.00[AMR][1000 genomes]
rs4279900	1.00[EUR][1000 genomes]
rs73023529	1.00[EUR][1000 genomes]
rs73023593	1.00[EUR][1000 genomes]
rs73041148	1.00[EUR][1000 genomes]
rs73041149	1.00[EUR][1000 genomes]
rs74122312	1.00[EUR][1000 genomes]
rs7521954	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170190800-170208800	Weak transcription	Psoas Muscle	Psoas
2	chr1:170196200-170202600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:170198600-170202600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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