Variant report

Variant	rs73023593
Chromosome Location	chr1:170139251-170139252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10919276	1.00[EUR][1000 genomes]
rs10919288	1.00[EUR][1000 genomes]
rs10919294	1.00[EUR][1000 genomes]
rs10919295	1.00[EUR][1000 genomes]
rs10919296	1.00[EUR][1000 genomes]
rs10919300	1.00[EUR][1000 genomes]
rs10919308	1.00[EUR][1000 genomes]
rs10919348	1.00[AMR][1000 genomes]
rs12061373	1.00[EUR][1000 genomes]
rs12061626	1.00[EUR][1000 genomes]
rs12066289	1.00[AMR][1000 genomes]
rs12071325	1.00[EUR][1000 genomes]
rs12073288	1.00[EUR][1000 genomes]
rs12075569	1.00[EUR][1000 genomes]
rs12076018	1.00[EUR][1000 genomes]
rs12077685	1.00[EUR][1000 genomes]
rs12079608	1.00[EUR][1000 genomes]
rs12087450	1.00[EUR][1000 genomes]
rs12088186	1.00[EUR][1000 genomes]
rs12090220	1.00[EUR][1000 genomes]
rs12091389	1.00[EUR][1000 genomes]
rs12095784	1.00[EUR][1000 genomes]
rs12097499	1.00[AMR][1000 genomes]
rs1332956	1.00[AMR][1000 genomes]
rs13376674	1.00[AMR][1000 genomes]
rs16862886	1.00[EUR][1000 genomes]
rs16862978	1.00[EUR][1000 genomes]
rs16863109	1.00[AMR][1000 genomes]
rs16863111	1.00[AMR][1000 genomes]
rs2779705	1.00[AMR][1000 genomes]
rs28413929	1.00[AMR][1000 genomes]
rs2901261	1.00[EUR][1000 genomes]
rs2990654	1.00[AMR][1000 genomes]
rs3119831	1.00[AMR][1000 genomes]
rs3121915	1.00[AMR][1000 genomes]
rs3936027	1.00[AMR][1000 genomes]
rs4279900	1.00[EUR][1000 genomes]
rs57038529	1.00[EUR][1000 genomes]
rs59149503	1.00[AMR][1000 genomes]
rs73023529	1.00[EUR][1000 genomes]
rs73041148	1.00[EUR][1000 genomes]
rs73041149	1.00[EUR][1000 genomes]
rs74122312	1.00[EUR][1000 genomes]
rs74122452	1.00[EUR][1000 genomes]
rs7529780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv3454	chr1:170134880-170149447	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170132400-170140200	Weak transcription	Right Ventricle	heart
2	chr1:170132800-170140600	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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