Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:170254209-170254604	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr1:170254165-170254655	H1-neurons	neurons:	n/a	n/a
3	BACH1	chr1:170254305-170254502	H1-hESC	embryonic stem cell:	n/a	n/a
4	REST	chr1:170253839-170254693	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
LINC01142	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10919348	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10919380	1.00[AMR][1000 genomes]
rs10919385	1.00[AMR][1000 genomes]
rs12066289	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067967	1.00[AMR][1000 genomes]
rs12088917	1.00[AMR][1000 genomes]
rs12096909	1.00[AMR][1000 genomes]
rs12097499	1.00[AMR][1000 genomes]
rs1332956	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375039	1.00[AMR][1000 genomes]
rs13375419	1.00[AMR][1000 genomes]
rs13376452	1.00[AMR][1000 genomes]
rs13376674	1.00[AMR][1000 genomes]
rs16863109	1.00[AMR][1000 genomes]
rs16863111	1.00[AMR][1000 genomes]
rs2779705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3119831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3121915	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3936027	1.00[AMR][1000 genomes]
rs59149503	1.00[AMR][1000 genomes]
rs73023593	1.00[AMR][1000 genomes]
rs7518635	1.00[AMR][1000 genomes]
rs7529780	1.00[AMR][1000 genomes]
rs7554519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170253200-170254600	Enhancers	Fetal Brain Male	brain
2	chr1:170253600-170254400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:170253800-170254600	Enhancers	Fetal Kidney	kidney
4	chr1:170254000-170259200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:170254200-170254400	Enhancers	Fetal Brain Female	brain
6	chr1:170254200-170254800	Active TSS	Brain Hippocampus Middle	brain
7	chr1:170254200-170259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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