Variant report

Variant	rs3119831
Chromosome Location	chr1:170241446-170241447
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10919348	1.00[AMR][1000 genomes]
rs10919380	1.00[AMR][1000 genomes]
rs10919385	1.00[AMR][1000 genomes]
rs12066289	1.00[AMR][1000 genomes]
rs12067967	1.00[AMR][1000 genomes]
rs12088917	1.00[AMR][1000 genomes]
rs12096909	1.00[AMR][1000 genomes]
rs12097499	1.00[AMR][1000 genomes]
rs1332956	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375039	1.00[AMR][1000 genomes]
rs13375419	1.00[AMR][1000 genomes]
rs13376452	1.00[AMR][1000 genomes]
rs13376674	1.00[AMR][1000 genomes]
rs16863109	1.00[AMR][1000 genomes]
rs16863111	1.00[AMR][1000 genomes]
rs2779705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413929	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2990654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3121915	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3936027	1.00[AMR][1000 genomes]
rs59149503	1.00[AMR][1000 genomes]
rs73023593	1.00[AMR][1000 genomes]
rs7518635	1.00[AMR][1000 genomes]
rs7529780	1.00[AMR][1000 genomes]
rs7554519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2388225	chr1:170241446-170241447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170240800-170242200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:170241200-170242200	Weak transcription	NHDF-Ad	bronchial
3	chr1:170241200-170242800	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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