Variant report

Variant	rs3936027
Chromosome Location	chr1:170187033-170187034
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10919348	1.00[AMR][1000 genomes]
rs10919380	1.00[AMR][1000 genomes]
rs10919385	1.00[AMR][1000 genomes]
rs12066289	1.00[AMR][1000 genomes]
rs12067967	1.00[AMR][1000 genomes]
rs12088917	1.00[AMR][1000 genomes]
rs12096909	1.00[AMR][1000 genomes]
rs12097499	1.00[AMR][1000 genomes]
rs1332956	1.00[AMR][1000 genomes]
rs13375039	1.00[AMR][1000 genomes]
rs13375419	1.00[AMR][1000 genomes]
rs13376452	1.00[AMR][1000 genomes]
rs13376674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863109	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16863111	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17350053	0.81[MKK][hapmap]
rs2779705	1.00[AMR][1000 genomes]
rs2779706	0.86[YRI][hapmap]
rs2806492	0.86[YRI][hapmap]
rs28413929	1.00[AMR][1000 genomes]
rs2990654	1.00[AMR][1000 genomes]
rs3119831	1.00[AMR][1000 genomes]
rs3121915	1.00[AMR][1000 genomes]
rs59149503	1.00[AMR][1000 genomes]
rs73023593	1.00[AMR][1000 genomes]
rs7518635	1.00[AMR][1000 genomes]
rs7529780	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7554519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	esv3693321	chr1:170167702-170188648	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170183000-170187200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:170183200-170187600	Weak transcription	Left Ventricle	heart
3	chr1:170184000-170187200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:170184200-170191200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:170184400-170194600	Weak transcription	Ovary	ovary
6	chr1:170184800-170190000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:170185000-170187200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:170185000-170187200	Weak transcription	Osteobl	bone
9	chr1:170185000-170194400	Weak transcription	NHDF-Ad	bronchial
10	chr1:170185600-170194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:170186000-170187800	Enhancers	Fetal Muscle Leg	muscle
12	chr1:170186600-170188000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:170186600-170188000	Enhancers	Adipose Nuclei	Adipose
14	chr1:170187000-170189200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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