Variant report

Variant	rs59149503
Chromosome Location	chr1:170221868-170221869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10919348	1.00[AMR][1000 genomes]
rs10919380	1.00[AMR][1000 genomes]
rs10919385	1.00[AMR][1000 genomes]
rs12066289	1.00[AMR][1000 genomes]
rs12067967	1.00[AMR][1000 genomes]
rs12088917	1.00[AMR][1000 genomes]
rs12096909	1.00[AMR][1000 genomes]
rs12097499	1.00[AMR][1000 genomes]
rs1332956	1.00[AMR][1000 genomes]
rs13375039	1.00[AMR][1000 genomes]
rs13375419	1.00[AMR][1000 genomes]
rs13376452	1.00[AMR][1000 genomes]
rs13376674	1.00[AMR][1000 genomes]
rs16863109	1.00[AMR][1000 genomes]
rs16863111	1.00[AMR][1000 genomes]
rs2779705	1.00[AMR][1000 genomes]
rs28413929	1.00[AMR][1000 genomes]
rs2990654	1.00[AMR][1000 genomes]
rs3119831	1.00[AMR][1000 genomes]
rs3121915	1.00[AMR][1000 genomes]
rs3936027	1.00[AMR][1000 genomes]
rs73023593	1.00[AMR][1000 genomes]
rs7518635	1.00[AMR][1000 genomes]
rs7529780	1.00[AMR][1000 genomes]
rs7554519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170220400-170223000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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