Variant report

Variant	rs16863393
Chromosome Location	chr3:151158721-151158722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13327359	0.87[CEU][hapmap]
rs73159933	0.91[EUR][1000 genomes]
rs73159941	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7633828	0.81[CEU][hapmap]
rs9852103	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:151148400-151161400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:151148800-151162400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:151153400-151162600	Weak transcription	Osteobl	bone
5	chr3:151155000-151162800	Weak transcription	NHLF	lung
6	chr3:151156000-151163200	Weak transcription	Fetal Brain Male	brain
7	chr3:151156200-151161400	Weak transcription	Ovary	ovary
8	chr3:151157600-151160000	Weak transcription	Fetal Lung	lung
9	chr3:151157600-151162600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:151157800-151162800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:151158000-151160800	Weak transcription	Aorta	Aorta
12	chr3:151158200-151159200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:151158200-151159200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:151158400-151158800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:151158400-151159000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:151158600-151159000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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