Variant report

Variant	rs73159941
Chromosome Location	chr3:151152492-151152493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16863393	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73159933	0.91[EUR][1000 genomes]
rs73869064	0.87[AFR][1000 genomes]
rs9852103	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:151133400-151154800	Weak transcription	Fetal Brain Male	brain
4	chr3:151140200-151152800	Weak transcription	Fetal Thymus	thymus
5	chr3:151140200-151154400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:151140200-151157000	Weak transcription	Dnd41	blood
7	chr3:151143200-151152600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:151143800-151154600	Weak transcription	Fetal Lung	lung
9	chr3:151144400-151153200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:151144800-151155000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:151145000-151154600	Weak transcription	Ovary	ovary
12	chr3:151146400-151153400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:151147200-151157800	Weak transcription	Aorta	Aorta
14	chr3:151148400-151161400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:151148800-151162400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:151149000-151152600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:151149000-151153200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:151149200-151152600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:151149400-151152600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr3:151150000-151152600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:151150000-151156800	Weak transcription	Pancreas	Pancrea
22	chr3:151150200-151153400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:151150200-151153400	Enhancers	Osteobl	bone
24	chr3:151150400-151157200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:151150400-151158200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:151151000-151153400	Enhancers	NH-A	brain
27	chr3:151151200-151152800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:151151200-151158400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:151151400-151153000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr3:151151400-151153200	Enhancers	HSMM	muscle
31	chr3:151151400-151153400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:151151600-151152800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:151151800-151152600	Enhancers	Stomach Mucosa	stomach
34	chr3:151151800-151152800	Enhancers	Liver	Liver
35	chr3:151151800-151153200	Enhancers	NHEK	skin
36	chr3:151152200-151152600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:151152200-151152600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:151152200-151152600	Enhancers	Rectal Smooth Muscle	rectum
39	chr3:151152200-151152800	Flanking Active TSS	A549	lung
40	chr3:151152200-151153200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr3:151152200-151153200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:151152200-151153600	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr3:151152200-151154600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:151152200-151155000	Enhancers	NHLF	lung
45	chr3:151152400-151152600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr3:151152400-151152800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:151152400-151152800	Enhancers	Colon Smooth Muscle	Colon
48	chr3:151152400-151152800	Flanking Active TSS	NHDF-Ad	bronchial
49	chr3:151152400-151153200	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr3:151152400-151153200	Enhancers	Hela-S3	cervix

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