Variant report

Variant	rs16864278
Chromosome Location	chr2:177569164-177569165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16864224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16864357	0.82[AFR][1000 genomes]
rs16864360	0.82[AFR][1000 genomes]
rs56019715	0.82[AFR][1000 genomes]
rs61279856	0.82[AFR][1000 genomes]
rs73976811	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976812	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976926	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177568600-177569600	Enhancers	Fetal Heart	heart
2	chr2:177568800-177569200	Enhancers	Fetal Brain Female	brain
3	chr2:177568800-177569200	Enhancers	Fetal Kidney	kidney
4	chr2:177568800-177569400	Enhancers	Ovary	ovary
5	chr2:177568800-177570600	Enhancers	Brain Germinal Matrix	brain
6	chr2:177569000-177569400	Enhancers	Right Ventricle	heart
7	chr2:177569000-177569600	Enhancers	Fetal Lung	lung
8	chr2:177569000-177569600	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links