Variant report

Variant	rs16864360
Chromosome Location	chr2:177593990-177593991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16864278	0.82[AFR][1000 genomes]
rs16864357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56019715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61279856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73975357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976826	0.82[AFR][1000 genomes]
rs73976926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976928	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7564441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7592025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177591400-177594000	Weak transcription	Fetal Lung	lung
2	chr2:177593000-177596600	Enhancers	Ovary	ovary
3	chr2:177593800-177594800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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