Variant report

Variant	rs73975357
Chromosome Location	chr2:177610418-177610419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:57920078..57923319-chr2:177608048..177611070,3	MCF-7	breast:
2	chr2:177610086..177610770-chr2:177679196..177679715,2	MCF-7	breast:
3	chr2:177603815..177606762-chr2:177609259..177611807,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16864357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16864360	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56019715	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61279856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976926	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976928	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7564441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7592025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177606800-177611800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:177608400-177612200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:177608600-177612000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr2:177608800-177612800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:177608800-177613000	Weak transcription	Left Ventricle	heart
6	chr2:177609200-177611200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:177609200-177611600	Weak transcription	Right Atrium	heart
8	chr2:177609200-177611800	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:177609200-177612200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:177609200-177613200	Weak transcription	Ovary	ovary
11	chr2:177609600-177610800	Weak transcription	Fetal Kidney	kidney
12	chr2:177609600-177612000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:177609800-177613400	Enhancers	Fetal Brain Female	brain
14	chr2:177610000-177611000	Enhancers	Primary B cells from peripheral blood	blood
15	chr2:177610000-177614200	Enhancers	Fetal Lung	lung
16	chr2:177610200-177610800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:177610200-177611000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr2:177610200-177611000	Enhancers	Brain Germinal Matrix	brain
19	chr2:177610200-177613800	Enhancers	Fetal Brain Male	brain
20	chr2:177610400-177610800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr2:177610400-177610800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr2:177610400-177610800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr2:177610400-177610800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr2:177610400-177610800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr2:177610400-177611000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr2:177610400-177611000	Active TSS	Brain Anterior Caudate	brain
27	chr2:177610400-177611600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr2:177610400-177612000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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