Variant report

Variant	rs16864519
Chromosome Location	chr2:177687534-177687535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16864468	0.91[MEX][hapmap]
rs16864480	0.83[MEX][hapmap]
rs16864582	0.83[MEX][hapmap]
rs1866131	0.83[MEX][hapmap]
rs6719403	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978423	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177680000-177689000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr2:177680200-177689000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:177682000-177689000	Weak transcription	Primary T cells from cord blood	blood
4	chr2:177683200-177688800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:177686400-177687600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr2:177687200-177690200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:177687400-177691400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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