Variant report

Variant	rs6719403
Chromosome Location	chr2:177689429-177689430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16864468	0.84[MEX][hapmap]
rs16864519	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978423	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177687200-177690200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:177687400-177691400	Weak transcription	Fetal Kidney	kidney
3	chr2:177688800-177692600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr2:177688800-177693000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr2:177689000-177689600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:177689000-177691200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr2:177689000-177692400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr2:177689000-177692400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:177689000-177693000	Enhancers	Primary T cells from cord blood	blood
10	chr2:177689000-177693000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:177689200-177689600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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