Variant report

Variant	rs16865825
Chromosome Location	chr2:178708156-178708157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178702452..178704995-chr2:178705681..178708457,3	MCF-7	breast:
2	chr2:178702819..178704367-chr2:178705919..178708336,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13018609	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13021998	0.87[ASW][hapmap];0.94[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1370661	0.81[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1405647	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1405650	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1405651	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1438051	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1438064	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16865819	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17400931	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs1837164	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2083156	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2118482	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2695091	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2695098	0.82[JPT][hapmap]
rs2695099	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2695724	0.87[JPT][hapmap]
rs2695740	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2695741	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2695756	0.86[ASN][1000 genomes]
rs34365395	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35873373	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3770047	0.85[YRI][hapmap]
rs3770054	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3821009	0.85[YRI][hapmap]
rs3915272	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs56748987	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71423509	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs753346	0.94[ASW][hapmap];0.94[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7567851	0.85[YRI][hapmap]
rs7592459	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7592731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7595421	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7609487	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178699800-178716600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:178704000-178709000	Weak transcription	Pancreas	Pancrea
3	chr2:178706800-178708400	Enhancers	Fetal Intestine Large	intestine
4	chr2:178707000-178708600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr2:178707600-178708600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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