Variant report

Variant	rs17400931
Chromosome Location	chr2:178663294-178663295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10497482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12994400	0.80[ASN][1000 genomes]
rs12994494	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13004037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13004202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13010041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13012088	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13018609	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13021998	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13026166	0.86[ASN][1000 genomes]
rs13027484	0.86[ASN][1000 genomes]
rs13033904	1.00[ASN][1000 genomes]
rs1438064	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16865819	0.83[EUR][1000 genomes]
rs16865825	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs17329811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2083156	0.87[EUR][1000 genomes]
rs2360221	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34171827	1.00[ASN][1000 genomes]
rs34356580	1.00[ASN][1000 genomes]
rs34365395	0.87[EUR][1000 genomes]
rs34956941	0.86[ASN][1000 genomes]
rs35391362	1.00[ASN][1000 genomes]
rs35586165	1.00[ASN][1000 genomes]
rs35600620	0.87[ASN][1000 genomes]
rs35873373	0.87[EUR][1000 genomes]
rs3770054	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4243392	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4893988	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4893989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56748987	0.87[EUR][1000 genomes]
rs6433695	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6756606	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71423505	1.00[ASN][1000 genomes]
rs71423507	1.00[ASN][1000 genomes]
rs71423508	1.00[ASN][1000 genomes]
rs71423509	0.87[EUR][1000 genomes]
rs71423514	0.86[ASN][1000 genomes]
rs753346	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7559765	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7588187	0.86[ASN][1000 genomes]
rs7588301	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7592278	1.00[ASN][1000 genomes]
rs7592459	0.87[EUR][1000 genomes]
rs7592731	0.81[EUR][1000 genomes]
rs7595421	0.87[EUR][1000 genomes]
rs7596644	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7605744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7609487	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs934803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs934804	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178661600-178663400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:178662200-178664000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:178663000-178664200	Weak transcription	Psoas Muscle	Psoas
4	chr2:178663200-178664200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:178663200-178664400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:178663200-178670000	Weak transcription	Adipose Nuclei	Adipose

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