Variant report

Variant	rs4893989
Chromosome Location	chr2:178665073-178665074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10169917	0.93[YRI][hapmap]
rs10497482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10930809	0.86[YRI][hapmap]
rs12994494	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13004037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13004202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13010041	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13012088	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13424417	0.94[YRI][hapmap]
rs1438060	1.00[YRI][hapmap]
rs17329811	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17400931	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1898589	0.93[YRI][hapmap]
rs1946814	1.00[YRI][hapmap]
rs2360221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2365895	1.00[YRI][hapmap]
rs2886499	1.00[YRI][hapmap]
rs2886500	1.00[YRI][hapmap]
rs3821010	1.00[YRI][hapmap]
rs41440047	1.00[YRI][hapmap]
rs4243392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4446096	1.00[YRI][hapmap]
rs4522644	1.00[YRI][hapmap]
rs4893988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6433695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6433697	0.88[YRI][hapmap]
rs6433698	1.00[YRI][hapmap]
rs6720891	1.00[YRI][hapmap]
rs6731843	0.94[YRI][hapmap]
rs6746962	0.94[YRI][hapmap]
rs6756606	1.00[CHB][hapmap]
rs6758543	1.00[YRI][hapmap]
rs6760949	0.87[EUR][1000 genomes]
rs7557283	1.00[YRI][hapmap]
rs7559765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7563140	0.94[YRI][hapmap]
rs7568068	1.00[YRI][hapmap]
rs7570898	1.00[YRI][hapmap]
rs7588301	1.00[CHB][hapmap]
rs7595951	0.92[YRI][hapmap]
rs7596644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7605744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs934802	1.00[YRI][hapmap]
rs934803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs934804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178663200-178670000	Weak transcription	Adipose Nuclei	Adipose

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