Variant report

Variant	rs13004202
Chromosome Location	chr2:178818206-178818207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178817015..178819167-chr2:178824979..178826962,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10497482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12987515	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12994400	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12994494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002118	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13002245	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13002444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13004037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13006992	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13007409	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13010041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs13012088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13014945	0.93[CEU][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13019139	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13022805	1.00[CEU][hapmap]
rs13026166	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13027484	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13030321	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13033904	0.86[EUR][1000 genomes]
rs1435573	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs1435574	0.94[CEU][hapmap]
rs17329811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17400931	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2360221	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2886651	0.94[CEU][hapmap]
rs34171827	0.94[EUR][1000 genomes]
rs34261053	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34356580	0.94[EUR][1000 genomes]
rs34595897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34648335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34699522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34752624	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34956941	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35068650	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35305315	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35391362	0.88[EUR][1000 genomes]
rs35391652	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35397469	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35586165	0.87[EUR][1000 genomes]
rs35678669	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35691613	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35862134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35987785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243392	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893988	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4893989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6433695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6746482	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs6756606	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs71423505	0.86[EUR][1000 genomes]
rs71423507	0.90[EUR][1000 genomes]
rs71423508	0.90[EUR][1000 genomes]
rs71423514	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71423525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423542	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71423543	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71423544	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7559765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7574975	0.93[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7588187	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7588301	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7592278	0.88[EUR][1000 genomes]
rs7596644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7605249	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7605744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs920092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs920095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs934803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs934804	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv3055	chr2:178800438-178819638	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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