Variant report

Variant	rs35397469
Chromosome Location	chr2:178926344-178926345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178922065..178924080-chr2:178924770..178926720,2	K562	blood:
2	chr2:178925975..178933021-chr2:178933088..178941034,14	K562	blood:
3	chr2:178926269..178929129-chr2:178929481..178932913,3	K562	blood:
4	chr2:178926269..178928564-chr2:178929481..178932343,4	K562	blood:
5	chr2:178925606..178928740-chr2:178934348..178939352,5	K562	blood:

Variant related genes	Relation type
ENSG00000128655	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12987515	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12994400	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13002118	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13002245	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13006992	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13007409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13014945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13019139	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13026166	0.86[AMR][1000 genomes]
rs13030321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1435573	0.98[EUR][1000 genomes]
rs17329811	0.86[AMR][1000 genomes]
rs34261053	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34595897	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34648335	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34699522	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34956941	0.86[AMR][1000 genomes]
rs35068650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35678669	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35691613	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35862134	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35987785	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6746482	0.95[EUR][1000 genomes]
rs71423525	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71423542	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71423543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71423544	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71423549	0.82[AMR][1000 genomes]
rs7574975	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7588187	0.86[AMR][1000 genomes]
rs7588301	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178924800-178931200	Weak transcription	Pancreas	Pancrea

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