Variant report

Variant	rs34595897
Chromosome Location	chr2:178851229-178851230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12987515	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12994400	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13002118	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13002245	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13004037	0.86[EUR][1000 genomes]
rs13006992	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13007409	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13010041	0.94[EUR][1000 genomes]
rs13012088	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13014945	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13019139	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13026166	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13027484	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13030321	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13033904	0.86[EUR][1000 genomes]
rs1435573	0.84[EUR][1000 genomes]
rs17329811	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34171827	0.94[EUR][1000 genomes]
rs34261053	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34356580	0.94[EUR][1000 genomes]
rs34648335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34699522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34752624	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34956941	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35068650	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35305315	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35391362	0.88[EUR][1000 genomes]
rs35391652	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35397469	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35586165	0.87[EUR][1000 genomes]
rs35678669	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35691613	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35862134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35987785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746482	0.86[EUR][1000 genomes]
rs6756606	0.90[EUR][1000 genomes]
rs71423505	0.86[EUR][1000 genomes]
rs71423507	0.90[EUR][1000 genomes]
rs71423508	0.90[EUR][1000 genomes]
rs71423514	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71423525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423542	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71423543	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71423544	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7574975	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7588187	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7588301	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7592278	0.88[EUR][1000 genomes]
rs7596644	0.90[EUR][1000 genomes]
rs7605249	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs920095	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3367225	chr2:178837494-178853153	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv583712	chr2:178843950-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv521228	chr2:178845469-178856900	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv583718	chr2:178845469-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv583731	chr2:178845755-178857169	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv583736	chr2:178851177-178857169	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178850000-178853200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:178850000-178854000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:178850000-178854200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links