Variant report

Variant	rs2886651
Chromosome Location	chr2:178911122-178911123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1020011	0.87[AFR][1000 genomes]
rs10497482	0.93[CEU][hapmap]
rs11686720	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12613904	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs12987515	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12994400	0.80[EUR][1000 genomes]
rs12994494	0.94[CEU][hapmap]
rs13002118	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs13002245	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs13002444	0.94[CEU][hapmap]
rs13004202	0.94[CEU][hapmap]
rs13006992	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs13007409	0.99[EUR][1000 genomes]
rs13007766	0.84[CEU][hapmap]
rs13010041	0.94[CEU][hapmap]
rs13012088	0.93[CEU][hapmap]
rs13014945	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs13019139	0.99[EUR][1000 genomes]
rs13030321	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1369518	0.87[YRI][hapmap]
rs1435573	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435574	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1527288	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs17329811	0.94[CEU][hapmap]
rs2117739	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs2164330	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2366352	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2886653	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs34261053	0.97[EUR][1000 genomes]
rs34595897	0.84[EUR][1000 genomes]
rs34648335	0.84[EUR][1000 genomes]
rs34699522	0.84[EUR][1000 genomes]
rs35068650	0.99[EUR][1000 genomes]
rs35397469	0.98[EUR][1000 genomes]
rs35678669	0.84[EUR][1000 genomes]
rs35691613	0.94[EUR][1000 genomes]
rs35862134	0.84[EUR][1000 genomes]
rs35987785	0.84[EUR][1000 genomes]
rs6746482	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6761951	0.84[AFR][1000 genomes]
rs71423525	0.84[EUR][1000 genomes]
rs71423542	0.97[EUR][1000 genomes]
rs71423543	0.95[EUR][1000 genomes]
rs71423544	0.97[EUR][1000 genomes]
rs7574975	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7588301	0.87[CEU][hapmap]
rs920095	0.83[YRI][hapmap]
rs9288012	0.88[YRI][hapmap]
rs9288013	0.87[YRI][hapmap]
rs959775	1.00[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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