Variant report

Variant	rs13007766
Chromosome Location	chr2:178897684-178897685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12987515	0.81[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12994400	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13002118	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13002245	0.81[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13006992	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13007409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13010041	0.81[EUR][1000 genomes]
rs13012088	0.81[EUR][1000 genomes]
rs13014945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13019139	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13026166	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13027484	0.81[EUR][1000 genomes]
rs13030321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1435573	0.81[CEU][hapmap];0.97[EUR][1000 genomes]
rs1435574	0.84[CEU][hapmap]
rs17329811	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2886651	0.84[CEU][hapmap]
rs34171827	0.81[EUR][1000 genomes]
rs34261053	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34356580	0.81[EUR][1000 genomes]
rs34595897	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34648335	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34699522	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34752624	0.81[EUR][1000 genomes]
rs34956941	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35068650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35305315	0.81[EUR][1000 genomes]
rs35391362	1.00[AFR][1000 genomes]
rs35391652	0.81[EUR][1000 genomes]
rs35397469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35678669	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35691613	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35862134	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35987785	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6746482	0.81[CEU][hapmap];0.99[EUR][1000 genomes]
rs71423514	0.81[EUR][1000 genomes]
rs71423525	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71423542	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71423543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71423544	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71423549	0.82[AMR][1000 genomes]
rs7574975	0.81[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7588187	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7588301	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7605249	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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