Variant report

Variant	rs934803
Chromosome Location	chr2:178690786-178690787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10169917	0.93[YRI][hapmap]
rs10497482	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs10930809	0.85[YRI][hapmap]
rs12987515	0.82[TSI][hapmap]
rs12994400	0.80[ASN][1000 genomes]
rs12994494	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13004037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13004202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13010041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13012088	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs13026166	0.86[ASN][1000 genomes]
rs13027484	0.86[ASN][1000 genomes]
rs13033904	1.00[ASN][1000 genomes]
rs13424417	0.94[YRI][hapmap]
rs1438060	1.00[YRI][hapmap]
rs17329811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17400931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1898589	0.92[YRI][hapmap]
rs1946814	1.00[YRI][hapmap]
rs2360221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365895	1.00[YRI][hapmap]
rs2886499	1.00[YRI][hapmap]
rs2886500	1.00[YRI][hapmap]
rs34171827	1.00[ASN][1000 genomes]
rs34356580	1.00[ASN][1000 genomes]
rs34956941	0.86[ASN][1000 genomes]
rs35391362	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35586165	1.00[ASN][1000 genomes]
rs35600620	0.87[ASN][1000 genomes]
rs3821010	1.00[YRI][hapmap]
rs41440047	1.00[YRI][hapmap]
rs4243392	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4446096	1.00[YRI][hapmap]
rs4522644	1.00[YRI][hapmap]
rs4893988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6433695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433697	0.87[YRI][hapmap]
rs6433698	1.00[YRI][hapmap]
rs6720891	1.00[YRI][hapmap]
rs6731843	0.93[YRI][hapmap]
rs6746962	0.93[YRI][hapmap]
rs6756606	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs6758543	1.00[YRI][hapmap]
rs6760949	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71423505	1.00[ASN][1000 genomes]
rs71423507	1.00[ASN][1000 genomes]
rs71423508	1.00[ASN][1000 genomes]
rs71423514	0.86[ASN][1000 genomes]
rs7557283	1.00[YRI][hapmap]
rs7559765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563140	0.93[YRI][hapmap]
rs7568068	1.00[YRI][hapmap]
rs7570898	1.00[YRI][hapmap]
rs7588187	0.86[ASN][1000 genomes]
rs7588301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7592278	1.00[ASN][1000 genomes]
rs7595951	0.92[YRI][hapmap]
rs7596644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7605744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs934802	1.00[YRI][hapmap]
rs934804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs934803	LOC100130691	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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