Variant report
| Variant | rs1898589 |
|---|---|
| Chromosome Location | chr2:178686138-178686139 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:178685875..178688046-chr2:178738979..178741149,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10169917 | 0.92[YRI][hapmap] |
| rs10930809 | 0.84[YRI][hapmap] |
| rs13424417 | 0.87[YRI][hapmap] |
| rs1438060 | 0.92[YRI][hapmap] |
| rs1946814 | 0.92[YRI][hapmap] |
| rs2360221 | 0.93[YRI][hapmap] |
| rs2365895 | 0.93[YRI][hapmap] |
| rs2886499 | 0.93[YRI][hapmap] |
| rs2886500 | 0.93[YRI][hapmap] |
| rs3821010 | 0.92[YRI][hapmap] |
| rs41440047 | 0.92[YRI][hapmap] |
| rs4243392 | 0.92[YRI][hapmap] |
| rs4446096 | 0.93[YRI][hapmap] |
| rs4522644 | 0.93[YRI][hapmap] |
| rs4893988 | 0.92[YRI][hapmap] |
| rs4893989 | 0.93[YRI][hapmap] |
| rs6433695 | 0.93[YRI][hapmap] |
| rs6433697 | 0.86[YRI][hapmap] |
| rs6433698 | 0.92[YRI][hapmap] |
| rs6720891 | 0.92[YRI][hapmap] |
| rs6731843 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6739045 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6746962 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6758543 | 0.93[YRI][hapmap] |
| rs7557283 | 0.93[YRI][hapmap] |
| rs7559765 | 0.93[YRI][hapmap] |
| rs7563140 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7568068 | 0.93[YRI][hapmap] |
| rs7570898 | 0.93[YRI][hapmap] |
| rs7595951 | 0.83[YRI][hapmap] |
| rs934802 | 0.92[YRI][hapmap] |
| rs934803 | 0.92[YRI][hapmap] |
| rs934804 | 0.93[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999086 | chr2:178262348-178773585 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv536055 | chr2:178262348-178773585 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv583690 | chr2:178638381-178712283 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
